CELLmicrocosmos.org

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Cm2 developer Written by bjoern Hits: 8477
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Subcategories

Cm2help

 

Cm2help 1. Introduction

Cm2help 2. The GUI

Cm2help 3. Managing local PDB Files

Cm2help 4. The PDB Integration

Cm2help 5. Building a Membrane

Cm2help 6. Special Membrane Properties

Cm2help 7. Atomic Representation

Cm2help 8. The Lipid Bilayer

Cm2help 9. Generating Output

Cm2help More about the Editor

Cm2dev

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    • selected  unselected  1. Introduction ...
      • selected  selected  unselected  1.1. About the MembraneEditor
      • selected  selected  unselected  1.2 Features
      • selected  selected  unselected  1.3 The UI Components
      • selected  selected  unselected  1.4 Requirements
    • selected  unselected  2. The GUI ...
      • selected  selected  unselected  2.1 Using the GUI
      • selected  selected  unselected  2.2 Shortcuts
      • selected  selected  unselected  2.3 3D Stereoscopy
    • selected  unselected  3. Managing local PDB Files ...
      • selected  selected  unselected  3.1 Setting a Database
      • selected  selected  unselected  3.2 Handling your files
      • selected  selected  unselected  3.3 Gaining Information
      • selected  selected  unselected  3.4 Managing Models
    • selected  unselected  4. The PDB Integration ...
      • selected  selected  unselected  4.1 Search & Download
      • selected  selected  unselected  4.2 Internet Configuration
    • selected  unselected  5. Building a Membrane ...
      • selected  selected  unselected  5.1 The File Menu
      • selected  selected  unselected  5.2 Dealing with Molecules
      • selected  selected  unselected  5.3 Aligning Molecules
      • selected  selected  unselected  5.4 More about the 3D Feature
      • selected  selected  unselected  5.5 3D-Settings
      • selected  selected  unselected  5.6 Manage Title Section
    • selected  unselected  6. Special Membrane Properties ...
      • selected  selected  unselected  6.1. Using Microdomains
      • selected  selected  unselected  6.2. Using Multilayers
    • selected  unselected  7. Atomic Representation ...
      • selected  selected  unselected  7.1. About
      • selected  selected  unselected  7.2. Predefine Conformation
      • selected  selected  unselected  7.3. Changing Granularity / Coarse Graining
    • selected  unselected  8. The Lipid Bilayer ...
      • selected  selected  unselected  8.1 Running a Membrane Algorithm
      • selected  selected  unselected  8.2 Included Algorithms
      • selected  selected  unselected  8.2.1 Linear Placing
      • selected  selected  unselected  8.2.2 Random Placing
      • selected  selected  unselected  8.2.3 Advanced Random Placing
      • selected  selected  unselected  8.2.4 Simulated Annealing
      • selected  selected  unselected  8.2.5 Distributor
      • selected  selected  unselected  8.2.6 Atom Level Minimizer
      • selected  selected  unselected  8.2.7 The Wanderer (Rookie)
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      • selected  selected  unselected  9.1 Pdb output settings - Dealing with limitation and compatibility issues
      • selected  selected  unselected  9.2 Written Contents
      • selected  selected  unselected  9.3 Preview your Membrane
      • selected  selected  unselected  9.4 Saving the Membrane File
      • selected  selected  unselected  9.5 Rebuild Membrane Model from existing pdb file
      • selected  selected  unselected  9.6 Membrane Analysis with APL@Voro
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      • selected  selected  unselected  11.2 Cm2 Team
      • selected  selected  unselected  11.3 Copyright
      • selected  selected  unselected  11.4 List of external Sources and Packages
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    • unselected  unselected  Essential Methods and Objects
    • unselected  unselected  Finishing your Membrane Packing Algorithm
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