CELLmicrocosmos Cell Modeling projects

With the CELLmicrocosmos 3.2 project seminar a new series of projects started at Bielefeld University. Using the software packages developed in the previous semesters, it was now possible to develope plug-ins, e.g. based on the MembraneEditor plugin-interface, or to generate cell models used for different applications.

WS2010/2011 CELLmicrocosmos Cell Modelling

periode	11.10.2010-04.02.2011
leader	Björn Sommer
doc.number	392170
amount	2-4 SWS
participants	Christian Gamroth Rudolf Warkentin Pascal Witthus
link	http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=19565395
summary	The PathwayIntegration was extended by a new node placing algorithm, mapping 2D layouts onto the cell component's surface. A new cell component builder was created which was later the base for the new CellEditor (Cm 3.2, not released by now). For the MembraneEditor, the PDB Exporter was improved.

SS2011 CELLmicrocosmos Cell Modelling

periode	04.04.2011-15.07.2011
leader	Björn Sommer
doc.number	392170
amount	2-4 SWS
participants	Yvonne Dyck Jonas Osterloff Raphael-Elias Reisch
link	http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=22905758
summary	The CellExplorer was extended by a better cell component distribution, a two-dimensional map to improve the orientation in the cell environment and a simple audio support (which is currently not really used).

 WS2011/2012 CELLmicrocosmos Cell Modelling

periode	10.10.2011-03.02.2012
leader	Björn Sommer
doc.number	392170
amount	4 SWS
participants	Yan Zhou
link	http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=25753656
summary	During this project, the first version of the Vesicle Builder for the MembraneEditor was created. Find the actual version in the forum.

SS2012 CELLmicrocosmos Cell Modelling

periode	02.04.2012-13.07.2012
leader	Björn Sommer
doc.number	392170
amount	4 SWS
participants	Christian Bender Tobias Hoppe
link	http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=29494624
summary	The first cell animation of the CELLmicrocosmos project with Blender was finished during this project. The result was shown at the cinema CinemaxX Bielefeld, of course in stereoscopic 3D! More ...

WS2012/2013 CELLmicrocosmos Cell Modelling

periode	08.10.2012-01.02.2013
leader	Björn Sommer
doc.number	392267
amount	4 SWS
participants	Nils Rothe
link	http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=32872519
summary	A new three-dimensional cell model of a nerve cell was created by using Fiji. This model will be used for the CellExplorer in the future.

SS2013 CELLmicrocosmos Cell Modelling

periode	08.04.2013-19.07.2013
leader	Björn Sommer
doc.number	392170
amount	2-4 SWS
participants	Niklas Biere Denis Kramer Lisa-Maria Hertwig Gökhan Konvanci Sandra Spönemann Plamen Velchov Markus Wendel Rabea Wick Ann-Kathrin Ziesenis
link	http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=37052682
summary	The Stereoscopic Window Different animations of a window-like environment have been created with Blender in stereoscopic 3D. SBML Level 3 Support Plugin Interface for the PathwayIntegration

WS2013/2014 CELLmicrocosmos Cell Modelling

ongoing ...

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